Freely available software for computational biology developed by UF researchers.This page lists downloadable software programs. Web-based tools are described in a separate page.
Binding site detection with spiking neural networks.
BISulfite Sequencing Comparative Analysis.
Genome-wide methylation analysis.
Managing barcodes in FASTA or FASTQ files.
Utilities for large FASTA or FASTQ files.
Utilities for HiPerGator.
Tools for high-throughput methylation analysis
Gene idendification and sequence annotation.
Pipeline Analysis for Next GEneration Amplicons.
Alternative splicing analysis with RNA-Seq – isoform reconstruction.
Python client for the MAPPER database of predicted transcription factor binding sites.
Tools for the RDP 16S RNA database.